Dataset for sequencing and de novo assembly of the European endangered white-clawed crayfish (Austropotamobius pallipes) abdominal muscle transcriptome
نویسندگان
چکیده
منابع مشابه
Clustering of Short Read Sequences for de novo Transcriptome Assembly
Given the importance of transcriptome analysis in various biological studies and considering thevast amount of whole transcriptome sequencing data, it seems necessary to develop analgorithm to assemble transcriptome data. In this study we propose an algorithm fortranscriptome assembly in the absence of a reference genome. First, the contiguous sequencesare generated using de Bruijn graph with d...
متن کاملResistance to the crayfish plague, Aphanomyces astaci (Oomycota) in the endangered freshwater crayfish species, Austropotamobius pallipes
The pathogen Aphanomyces astaci Schikora 1906 is responsible for the decline of the native crayfish species of Europe, and their current endangered status. This pathogenic species is native to North America and only colonizes aquatic decapods. The North American crayfish species have a high resistance to this pathogen, while species from other regions are highly susceptible. However, recent fie...
متن کاملThe British freshwater crayfish Austropotamobius pallipes
lives in streams or pools that are liable to dry up or become stagnant, and these animals are known to leave water voluntarily to forage or to invade neighbouring habitats (Huxley, 1896; Taylor and Wheatly, 1980). When placed in air, the gills collapse and the crayfish suffer continuously from systemic hypoxia and hypercapnia. Associated with an initial virtual anoxia and a switch to anaerobic ...
متن کاملThe long-term effects and detection ranges of passive integrated transponders in white-clawed crayfish Austropotamobius pallipes
This is an Open distribution, Abstract – Individual identification of the endangered white-clawed crayfish (Austropotamobius pallipes) can provide valuable information when assessing long-term survival of animals released into the wild; currently the most effective method is the use of passive integrated transponders (PIT) tags. A 360 days ex situ experiment was undertaken on 20-month, captive-...
متن کاملSequencing and De Novo Assembly of the Gonadal Transcriptome of the Endangered Chinese Sturgeon (Acipenser sinensis)
BACKGROUND The Chinese sturgeon (Acipenser sinensis) is endangered through anthropogenic activities including over-fishing, damming, shipping, and pollution. Controlled reproduction has been adopted and successfully conducted for conservation. However, little information is available on the reproductive regulation of the species. In this study, we conducted de novo transcriptome assembly of the...
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ژورنال
عنوان ژورنال: Data in Brief
سال: 2020
ISSN: 2352-3409
DOI: 10.1016/j.dib.2020.105166